As a leader:

• Ya Yo Me Cure (American Clave/Sunnyside, 1979)
• The River Is Deep (Enja, 1982)
• Rumba para Monk (Sunnyside, 1988)
• Obatalá (Enja, 1988)
• Earthdance (Sunnyside, 1990)
• Moliendo Café (Sunnyside, 1991)
• Crossroads (Fantasy, 1994)
• Pensativo (Fantasy, 1995)
• Impressions with Afro Blue Band, (Fantasy, 1995)
• Fire Dance (Fantasy,1996)
• Jerry Gonzalez & the Fort Apache Band Live (1996)
• Calle 54 (Calle54, 2000)
• Jerry González & Federico Lechner: A primera vista (2002)
• Jerry Gonzalez & Los Piratas del Flamenco (Lola Records/Sunnyside, 2004)
• Rumba Buhaina (Sunnyside, 2005)
• Music for a Big Band (Youkali/Universal, 2006)
• Avísale a mi contrario que aquí estoy yo (Cigala Music/Warner, 2010)
• Jerry González y el Comando de la Clave (Sunnyside/2011)

As sideman:

• George Benson: The other side of Abbey Road (A&M, 1969)
• Bobby Paunetto: Commit to Memory (Pathfinder/Tonga, 1970)
• Dizzy Gillespie: Portrait of Jenny (Perception, 1970)
• Clifford Thornton: Communications Network (Third World, 1972)
• Huston Person: Island Episode (Prestige, 1973)
• Eddie Palmieri: Sentido (1973)
• Clifford Thornton: Gardens of Harlem (JCOA, 1974)
• Eddie Palmieri: Unfinished Masterpiece (Coco/MPL, 1974)
• Bobby Paunetto: Paunetto's Point (Pathfinder/Toga, 1974)
• Charlie Palmieri: Impulsos (Coco/MPL, 1975)
• Grupo Folklórico Experimental Nuevayorkino: Concepts of Unity (Salsoul, 1975)
• Bobby Paunetto: Commit to Memory (Pathfinder/Toga, 1976)
• Grupo Folklórico Experimental Nuevayorkino: Lo dice todo (Salsoul, 1976)
• Paquito D'Rivera: Blowin' (Columbia, 1981)
• Totico: Totico y sus rumberos (Montuno, 1981)
• Kip Hanrahan: Coup de tête (American Clavé, 1981)
• McCoy Tyner: Looking out (Columbia, 1982)
• Kip Hanrahan: Desire Develops an Edge (American Clavé, 1981)
• Tito Puente: On Broadway (Concord Picante, 1982)
• Abbey Lincoln: Talking to the sun (Enja, 1983)
• Kirk Lightsey: Isotope (Criss Cross, 1983)
• Jaco Pastorius: Jaco Pastorius live in New York Vol. I & III (Big World, 1985)
• Carlos "Patato" Valdés: Masterpiece (Messidor, 1984)
• Virgilio Martí: Saludos a los rumberos (Caimán,1984)
• Jaco Pastorius: Punk Jazz (Big World, 1986)
• Franco Ambrosetti: Movies (Enja, 1986)
• Soundtrack of the movie Crossover Dreams (Electra/Asylum1986)
• Hilton Ruiz: El camino (RCA/BMG/Novus, 1987)
• Steve Turré: Viewpoints on Vibrations (Stash, 1987)
• Santi Debriano: Obeah (Free Lance, 1987)
• Kip Hanrahan: Days and nights of blue luck inverted (American Clavé, 1987)
• Steve Turré: Fire and Ice (Stash, 1988)
• Kenny Vance: The Performer (Rockaway/Gold Castle, 1988) http://www.kennyvance.com/vid13performer.html
• Larry Willis: Heavy Blue (Steeplechase, 1989)
• Kirk Lightsey: Everything is changed (Sunnyside, 1989)
• McCoy Tyner: The Turning Point (Birdology, 1991)
• Charles Fambrough: The proper angle (CTI, 1991)
• Kenny Kirkland: Kenny Kirkland (GRP, 1991)
• Don Byron: Music for six musicians (1992)
• Dave Valentin: Tropic Heat (GRP, 1993)
• Bobby Hutcherson: Acoustic Masters II (Atlancic, 1993)
• McCoy Tyner: Journey (Birdology, 1993)
• Hilton Ruiz: Heroes (Telarc, 1993)
• David Sanchez: Sketches of Dreams (Columbia, 1994)
• Sonny Fortune: A Better Understanding (Blue Note, 1994)
• Afro Blue band: Impressions (1995)
• Chico O'Farrill: Pure Emotion (Milestone, 1995)
• Giovanni Hidalgo: Time Shifter (Tropijazz, 1996)
• Bobby Matos: Footprints (Cubop, 1996)
• Abbey Lincoln: You and I (Jazzfest, 1997)
• Deep Rumba: The music of Marlon Simon (K-Jazz, 1998)
• Arturo O'Farrill: Blood Lines (Milestone, 1999)
• Batacumbele: Hijos de tambó (Batá, 1999)
• Rumbajazz: Tribute to Chombo (Sunnyside, 1999)
• Abbey Lincoln: Over the years (Verve, 2000)
• Diego "El Cigala": Corren tiempos de alegría (2001)
• Andrés Calamaro: Tinta Roja (2001)
• Martirio: Mucho Corazón (2001)
• Enrique Morente: Pequeño Reloj (Virgin/Emi, 2003)
• Paco de Lucía: Cositas Buenas (2004)
• Diego "El Cigala": Picasso en mis ojos (2005)
• Niño Josele: Paz (2006)
• Diego Amador: "El aire de lo puro" (2006)
• Javier Limón: La tierra del Agua (2007)
• Javier Limón: Son de Limón (2008)
• Andrés Calamaro: Obras Incompletas (2009)
• Andrés Calamaro: On the Rock (2010)
• Alain Pérez: Apetecible (2010)